Книга Логика случая. О природе и происхождении биологической эволюции - Евгений Кунин

Putnam, N. H., M. Srivastava, U. Hellsten, B. Dirks, J. Chapman, A. Salamov, A. Terry, H. Shapiro, E. Lindquist, V. V. Kapitonov, J. Jurka, G. Genikhovich, I. V. Grigoriev, S. M. Lucas, R. E. Steele, J. R. Finnerty, U. Technau, M. Q. Martindale, and D. S. Rokhsar. (2007) Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization. Science 317: 86–94.

Radman, M. (1975) SOS Repair Hypothesis: Phenomenology of an Inducible DNA Repair Which Is Accompanied by Mutagenesis. Basic Life Sci 5A: 355–367.

Radman, M., I. Matic, and F. Taddei. (1999) Evolution of Evolvability. Ann N Y Acad Sci 870: 146–155. Ragan, M. A. (2001) Detection of Lateral Gene Transfer among Microbial Genomes. Curr Opin Genet Dev 11: 620–626.

Ragan, M. A., J. O. McInerney, and J. A. Lake, eds. (2009) Theme Issue: The Network of Life: Genome Beginnings and Evolution. Phil Trans R Soc B.

Rao, V. B., and M. Feiss. (2008) The Bacteriophage DNA Packaging Motor. Annu Rev Genet 42: 647–681. Raoult, D. (2010) The Post-Darwinist Rhizome of Life. Lancet 375: 104–105.

Raoult, D., S. Audic, C. Robert, C. Abergel, P. Renesto, H. Ogata, B. La Scola, M. Suzan, and J. M. Claverie. (2004) The 1.2-Megabase Genome Sequence of Mimivirus. Science 306: 1,344—1,350.

Raoult, D., and P. Forterre. (2008) Redefining Viruses: Lessons from Mimivirus. Nat Rev Microbiol 6: 315–319.

Ravasi, T., H. Suzuki, C. V. Cannistraci, S. Katayama, V. B. Bajic, K. Tan, A. Akalin, S. Schmeier, M. Kanamori-Katayama, N. Bertin, P. Carninci, C. O. Daub, A. R. Forrest, J. Gough, S. Grimmond, J. H. Han, T. Hashimoto, W. Hide, O. Hofmann, A. Kamburov, M. Kaur, H. Kawaji, A. Kubosaki, T. Lassmann, E. van Nimwegen, C. R. MacPherson, C. Ogawa, A. Radovanovic, A. Schwartz, R. D. Teasdale, J. Tegner, B. Lenhard, S. A. Teichmann, T. Arakawa, N. Ninomiya, K. Murakami, M. Tagami, S. Fukuda, K. Imamura, C. Kai, R. Ishihara, Y. Kitazume, J. Kawai, D. A. Hume, T. Ideker, and Y. Hayashizaki. (2010) An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man. Cell 140: 744–752.

R aymond, J., O. Zhaxybayeva, J. P. Gogarten, S. Y. Gerdes, and R. E. Blankenship.(2002) Whole-Genome Analysis of Photosynthetic Prokaryotes. Science 298: 1,616—1,620.

Rees, M. (2001) Our Cosmic Habitat. Princeton: Princeton University Press.

Richards, E. J. (2006) Inherited Epigenetic Variation — Revisiting Soft Inheritance. Nat Rev Genet 7: 395–401.

Richards, T. A., and T. Cavalier-Smith. (2005) Myosin Domain Evolution and the Primary Divergence of Eukaryotes. Nature 436: 1,113—1,118.

Ridley, M. (2006) Genome. New York: Harper Perennial.

Rivera, M. C., and J. A. Lake. (2004) The Ring of Life Provides Evidence for a Genome Fusion Origin of Eukaryotes. Nature 431: 152–155.

Robertson, M. P., S. M. Knudsen, and A. D. Ellington. (2004) In Vitro Selection of Ribozymes Dependent on Peptides for Activity. RNA 10: 114–127.

Roger, A. J. (1999) Reconstructing Early Events in Eukaryotic Evolution. Am Nat 154: S146—163.

Rogozin, I. B., M. K. Basu, M. Csuros, and E. V. Koonin. (2009) Analysis of Rare Genomic Changes Does Not Support the Unikont-Bikont Phylogeny and Suggests Cyanobacterial Symbiosis As the Point of Primary Radiation of Eukaryotes. Genome Biol Evol 1: 99—113.

Rogozin, I. B., K. S. Makarova, J. Murvai, E. Czabarka, Y. I. Wolf, R. L. Tatusov, L. A. Szekely, and E. V. Koonin. (2002) Connected Gene Neighborhoods in Prokaryotic Genomes. Nucleic Acids Res 30: 2,212—2,223.

Rogozin, I. B., Y. I. Wolf, A. V. Sorokin, B. G. Mirkin, and E. V. Koonin. (2003) Remarkable Interkingdom Conservation of Intron Positions and Massive, Lineage-Specific Intron Loss and Gain in Eukaryotic Evolution. Curr Biol 13: 1,512—1,517.

Rokas, A., and S. B. Carroll. (2006) Bushes in the Tree of Life. PLoS Biol 4: e352. Rosenberg, S. M. (2001) Evolving Responsively: Adaptive Mutation. Nat Rev Genet 2: 504–515.

Russell, M. J. (2007) The Alkaline Solution to the Emergence of Life: Energy, Entropy, and Early Evolution. Acta Biotheor 55: 133–179.

Russell, M. J., and A. J. Hall. (1997) The Emergence of Life from Iron Monosulphide Bubbles at a Submarine Hydrothermal Redox and Ph Front. J Geol Soc London 154: 377–402.

Russell, R. (2008) RNA Misfolding and the Action of Chaperones. Front Biosci 13: 1—20.

Rutherford, S., Y. Hirate, and B. J. Swalla. (2007) The Hsp9 °Capacitor, Developmental Remodeling, and Evolution: The Robustness of Gene Networks and the Curious Evolvability of Metamorphosis. Crit Rev Biochem Mol Biol 42: 355–372.

Sagan, L. (1967) On the Origin of Mitosing Cells. J Theor Biol 14: 255–274.

Salgado, H., G. Moreno-Hagelsieb, T. F. Smith, and J. Collado-Vides. (2000) Operons in Escherichia Coli: Genomic Analyses and Predictions. Proc Natl Acad Sci USA 97: 6,652—6,657.

Sapp, J. (2009) The New Foundations of Evolution: On the Tree of Life. Oxford: Oxford University Press.

Saxinger, C., and C. Ponnamperuma. (1974) Interactions Between Amino Acids and Nucleotides in the Prebiotic Milieu. Orig Life 5: 189–200.

Schrimpf, S. P., M. Weiss, L. Reiter, C. H. Ahrens, M. Jovanovic, J. Malmstrom, E. Brunner, S. Mohanty, M. J. Lercher, P. E. Hunziker, R. Aebersold, C. von Mering, and M. O. Hengartner. (2009) Comparative Functional Analysis of the Caenorhabditis Elegans and Drosophila Melanogaster Proteomes. PLoS Biol 7: e48.

Schroedinger, E. What Is Life?: With Mind and Matter and Autobiographical Sketches. Cambridge: Cambridge University Press.

Sella, G., and A. E. Hirsh. (2005) The Application of Statistical Physics to Evolutionary Biology. Proc Natl Acad Sci USA 102: 9,541—9,546.

Seshasayee, A. S., G. M. Fraser, and N. M. Luscombe. (2010) Comparative Genomics of Cyclic-Di-Gmp Signalling in Bacteria: Post-Translational Regulation and Catalytic Activity. Nucleic Acids Res 38: 5,970—5,981.

Shabalina, S. A., and E. V. Koonin. (2008) Origins and Evolution of Eukaryotic RNA Interference. Trends Ecol Evol 23: 578–587.

Shiflett, A. M., and P. J. Johnson. (2010) Mitochondrion-Related Organelles in Eukaryotic Protists. Annu Rev Microbiol 64: 409–429.

Shnol, S. E. (2001) Heroes, Villains, Conformists of Russian Science. Moscow: Kron-Press.